BIOINFORMATICS SERVICES / TOOLS / CONSULTING

Fast & Efficient

Custom Developed

Tools & Services

About us

Who Are We?

biobyte solutions provides customised bioinformatics services and tools.

Our Services

From text mining to data management

First class custom software development, resource integration and biological data management. Unmatched metagenomics data processing and analysis.
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Our Portfolio

Tools used by scientists worldwide

Our tools can be fully customised and integrated into your existing infrastructure.
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Data Visualisation

As complex or simple as required

From simple phylogenetic trees to advanced 3D interactive data annotation, explore your data in novel ways using our easy to use tools.
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Consulting

Expert biocomputational help

Our extensive network of professionals and scientists offers help and consulting with any biocomputational questions you might have.
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Small and focused team of experts

One size does not fit all. Our software and services are as flexible as you require.

Custom solutions

From visualisation and management of biological information to cutting-edge metagenomics sequence data processing and analysis, our tools and services will advance and simplify your research.

Our Mission

Solving biocomputational problems through custom tools developed specifically for each individual customer.

Our Services

Our worldwide network of leading biocomputational scientists is a warranty for expertise in a wide range of areas, ensuring our mandate to take your bioinformatics research to the next level and to extract meaningful signals from heterogeneous data.

Drug target validation

We offer innovative ways of drug target validation and prediction.

Customized solutions for the screening and analysis of large compound sets and their human targets
Drug target prediction based on their side effects
Prediction of possible drug side effects based on their target-binding profiles
Prediction of metabolization pathways and drug interference

More info at SIDER: drug side effect resource

Database and resource integration

If you use many in-house biological databases and resources, they are likely scattered through various departments, making them hard to access and use for your scientists.

Simplify the process using our custom user interfaces. We will work directly with you and tweak the system based on the direct feedback from the actual end users, making sure the interfaces are easy to understand and use.

Metagenomics data management and analysis

From sample organisation, anonymisation and tracking to advanced data analysis pipelines, we offer fully integrated systems custom tailored to your needs. Various large-scale metagenomics projects like my.microbes or MetaCardis are powered by our software solutions.

You can depend on our extensive experience and expert advice for all stages of metagenomics data processing. Learn about the common pitfalls and extract the maximum amount of meaningful information from your metagenomics sequence.

Computing cluster or cloud computing setups

Our experts can help you implement and configure computing clusters of any size, from initial hardware selection to the installation of opertaing systems and setup of required tools.

If you plan to move your analysis pipelines to the cloud, we offer setup and configuration of virutal machines and clusters in any cloud services provider. Lean on our experience with creating Docker containers, setting up SeqWare workflows and other cloud technologies to significantly simplify the transition process.

Software development

The simplest solution to the development of various small and micro-scale software packages is to simply outsource it. Based on your requirements, biobyte solutions offers quick development and deployment of various small bioinformatics tools.

A selection of our popular biocomputational tools is described below.

Web site development

From planning to implementation, you can rely on our knowledge and experience in development of fully custom web sites, with integration of any database engine, custom search engines, integration with merchant systems (like PayPal or Amazon), custom data visualisation modules or any other requirements. Examples of our work include OpenHelix, SMART, phyloT and many others.

Ready to Visualise?

Data visualisation is our passion. Integrate any of our tools into your existing infrastructure, or contact us to discuss the best solution to the specific visualisation problem you have. We offer fully interactive, easy to use, online or offline software packages to visualise and annotate any dataset.

Our Tools Portfolio

Our Portfolio

A selection of our tools, used by scientists worldwide. Each can be fully customised and integrated into your data processing pipelines.

iPATH Annotation and exploration of pathways maps iPath: interactive Pathways Explorer

iTOL Display and advanced annotation of phylogeneic trees iTOL: interactive Tree of Life

GMGC The Global Microbial Gene Catalog is an integrated, consistently-processed, gene catalog of the microbial world, combining metagenomics and high-quality sequenced isolates GMGC

phyloT Flexible phylogenetic tree generator, based on NCBI taxonomy phyloT

STRING A database of known and predicted protein-protein interactions STRING

STITCH A database of protein-chemical interactions STITCH

SMART Annotation of protein domains and exporation of domain architectures SMART

proGenomes A database of consistently annotated bacterial and archaeal genomes

insideNano Exploring connections between phenotypic entities based on their effects on genes iNano

i3dcloud Interactive visualisation and annotation of 3D scatter graphs

metaSampleDB Advanced metagenomics sample management and data analysis integration platform i3dCloud

PTMcode A database of protein post-translational modifications and their associations

Our Customers

Grants

If you need a reliable SME partner for your next grant proposal, consider biobyte solutions. Our custom data management and visualisation tools are used in various large scale collaborative projects. We have participated in the following EU funded research projects:

MODHEP : central data repository development,hosting and management
MetaCardis : custom data visualisation
NANOSOLUTIONS : central data repository development and management
DD-DeCaF : data management and consolidation, visualization of metabolic networks
MICROB-PREDICT : central data repository development and management
BIOcean5D : central data repository development and management
BioNT : BIO Network for Training, providing high-quality training program and community for digital skills

Contact Us

The easiest way to contact us is directly via email at . Alternatively, give us a call at one of the phone numbers below.

Bothestr 142, 69126 Heidelberg, Germany +49-(0)172 847 7510 +49-(0)6221 673 4320 www.biobyte.de

Impressum:
Ust-IdNr:	DE259035096
Steuernummer:	32019/20747
Registered:	HRB 704090 (Amtsgericht Mannheim)
Geschäftsführer:	Ivica Letunic
Privacy policy:	available here